JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRP15_chr1_218280293_218342983	0/0	t0040	6917	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0041	6895	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0042	6895	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0043	6896	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0044	6908	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0045	6905	1	0	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0046	6906	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0047	6911	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0048	6911	1	0	0	0	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0049	6911	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0050	6913	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0051	6910	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0052	6916	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0053	6918	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0054	6912	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0055	6912	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0056	6911	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0057	6911	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0058	6917	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0059	6913	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0060	6912	1	0	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0061	6913	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0062	6913	1	0	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0063	6913	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0064	6914	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0065	6914	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0066	6916	1	0	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0067	6915	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0068	6916	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0069	6916	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0070	6916	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0071	6919	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0072	6916	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0073	6916	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0074	6917	1	0	0	0	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0075	6917	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0076	6918	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0077	6919	1	0	0	1	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0078	6931	1	0	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0079	6932	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0080	6933	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0081	6901	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0082	6902	1	0	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0083	6911	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0084	6910	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0085	6916	1	0	0	0	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0086	6914	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0087	6915	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	t0088	6918	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP1B_chr21_43654560_43701079	0/0	t0001	2813	171	25	40	87	5	14	copy fasta	RRP1B	chr21	43654560	43701079