JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRP1B_chr21_43654560_43701079	1/1	t0002	2802	78	2	23	33	5	13	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0003	2813	55	10	8	34	0	3	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0004	2810	16	15	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0005	2814	7	6	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0006	2810	7	7	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0007	2802	4	0	0	0	0	4	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0008	2813	4	4	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0009	2814	4	3	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0010	2806	4	4	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0011	2813	3	3	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0012	2814	3	3	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0013	2813	2	0	2	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0014	2813	2	2	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0015	2813	2	0	0	0	0	2	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0016	2813	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0017	2813	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0018	2802	1	0	0	1	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0019	2814	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0020	2813	1	0	0	1	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0021	2814	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0022	2813	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0023	2810	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0024	2806	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	t0025	2813	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1_chr21_43784577_43810293	0/0	t0001	1571	104	36	25	30	2	11	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/1	t0002	1572	96	15	26	35	6	13	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0003	1573	86	1	19	53	4	9	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0004	1572	35	1	4	26	0	4	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0005	1572	18	18	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0006	1573	11	9	2	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0007	1572	6	0	2	4	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0008	1571	4	4	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0009	1573	3	0	0	2	0	1	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0010	1571	2	2	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0011	1572	2	0	0	0	2	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0012	1571	2	0	1	1	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0013	1572	2	2	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0014	1572	2	2	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0015	1571	2	0	0	1	0	1	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0016	1573	2	1	0	1	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0017	1572	2	0	0	2	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0018	1572	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0019	1571	1	0	0	0	0	1	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0020	1571	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0021	1572	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0022	1571	1	0	1	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0023	1572	1	0	0	1	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0024	1571	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0025	1571	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	1/0	t0026	1573	1	0	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293