JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRP1_chr21_43784577_43810293	0/0	t0027	1573	1	0	0	1	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0028	1573	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0029	1572	1	0	0	1	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0030	1573	1	0	0	0	0	1	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0031	1571	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	t0032	1572	1	0	0	0	0	1	copy fasta	RRP1	chr21	43784577	43810293
RRP36_chr6_43016623_43034599	1/1	t0001	404	328	89	68	123	14	32	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	t0002	404	2	2	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	t0003	404	1	0	0	1	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	t0004	404	1	0	1	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	t0005	404	1	0	1	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	t0006	404	1	1	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP7A_chr22_42503344_42524796	0/1	t0001	4576	49	6	26	2	5	9	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	1/0	t0002	4577	40	2	14	8	4	11	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0003	4591	30	13	2	12	0	3	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0004	4601	21	0	4	16	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0005	4603	18	0	0	17	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0006	4599	13	0	0	12	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0007	4577	12	0	0	12	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0008	4591	10	0	0	10	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0009	4605	8	0	0	7	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0010	4593	7	1	3	3	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0011	4613	7	1	5	0	1	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0012	4591	4	0	0	4	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0013	4576	4	0	3	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0014	4591	4	4	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0015	4577	3	0	0	0	0	3	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0016	4609	3	0	0	3	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0017	4605	3	0	0	3	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0018	4597	3	0	0	3	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0019	4593	3	0	0	3	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0020	4598	3	3	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0021	4593	3	0	2	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0022	4576	3	2	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0023	4578	3	0	2	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0024	4609	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0025	4579	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0026	4579	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0027	4595	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0028	4613	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0029	4613	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0030	4607	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0031	4603	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0032	4604	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0033	4601	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0034	4600	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0035	4593	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0036	4591	2	0	1	0	1	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0037	4591	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0038	4596	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796