JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRP7A_chr22_42503344_42524796	0/0	t0039	4589	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0040	4601	2	1	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0041	4577	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0042	4599	2	0	0	2	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0043	4612	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0044	4615	2	0	0	0	2	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0045	4617	2	0	1	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0046	4611	2	0	2	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0047	4603	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0048	4595	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0049	4577	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0050	4576	1	0	0	0	1	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0051	4590	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0052	4603	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0053	4624	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0054	4611	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0055	4576	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0056	4579	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0057	4604	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0058	4604	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0059	4599	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0060	4603	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0061	4599	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0062	4597	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0063	4600	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0064	4603	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0065	4603	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0066	4621	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0067	4617	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0068	4611	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0069	4607	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0070	4602	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0071	4603	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0072	4601	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0073	4586	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0074	4597	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0075	4593	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0076	4587	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0077	4575	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0078	4603	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0079	4599	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0080	4601	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0081	4602	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0082	4608	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0083	4604	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0084	4607	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0085	4605	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0086	4611	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0087	4607	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0088	4603	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796