JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRP7A_chr22_42503344_42524796	0/0	t0089	4576	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0090	4591	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0091	4601	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0092	4578	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0093	4590	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0094	4591	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0095	4603	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0096	4599	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0097	4608	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0098	4602	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0099	4592	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0100	4593	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0101	4592	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0102	4593	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0103	4598	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0104	4594	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0105	4594	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0106	4595	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0107	4593	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0108	4591	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0109	4591	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0110	4591	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0111	4603	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0112	4577	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0113	4577	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0114	4577	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0115	4577	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0116	4575	1	0	0	0	1	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0117	4575	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0118	4576	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0119	4579	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0120	4597	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0121	4591	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0122	4604	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0123	4598	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0124	4605	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0125	4577	1	0	0	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0126	4576	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0127	4600	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0128	4629	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0129	4615	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0130	4607	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0131	4593	1	0	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	t0132	4591	1	0	0	0	1	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP8_chr11_6590072_6608616	0/1	t0001	5190	140	5	17	89	5	23	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0002	5191	72	15	16	26	8	7	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0003	5189	17	2	0	15	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0004	5192	14	2	2	8	0	2	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0005	5190	13	0	5	5	1	2	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0006	5189	11	1	3	3	2	2	copy fasta	RRP8	chr11	6590072	6608616