JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRP8_chr11_6590072_6608616	0/0	t0007	5191	9	2	1	5	0	1	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0008	5187	8	7	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0009	5189	7	0	3	4	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0010	5190	7	1	2	3	0	1	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	1/0	t0011	5189	7	6	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0012	5188	7	7	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0013	5191	6	0	5	0	0	1	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0014	5189	5	0	0	5	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0015	5190	5	0	4	0	1	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0016	5189	4	0	2	2	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0017	5186	4	4	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0018	5186	4	4	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0019	5188	4	4	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0020	5191	4	4	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0021	5192	4	2	1	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0022	5191	3	0	2	0	1	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0023	5187	3	2	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0024	5188	3	3	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0025	5190	3	0	0	3	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0026	5190	3	0	0	3	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0027	5191	3	2	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0028	5190	3	0	0	2	0	1	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0029	5185	2	1	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0030	5194	2	1	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0031	5188	2	0	2	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0032	5189	2	2	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0033	5189	2	2	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0034	5190	2	0	0	2	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0035	5191	2	1	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0036	5191	2	0	1	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0037	5191	2	0	0	2	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0038	5190	2	0	0	0	0	2	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0039	5188	2	0	0	1	0	1	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0040	5190	2	0	2	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0041	5189	2	0	0	1	0	1	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0042	5189	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0043	5190	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0044	5192	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0045	5191	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0046	5190	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0047	5189	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0048	5191	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0049	5194	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0050	5190	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0051	5187	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0052	5188	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0053	5189	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0054	5189	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0055	5189	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0056	5191	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616