JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RRP8_chr11_6590072_6608616	0/0	t0057	5189	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0058	5188	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0059	5189	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0060	5189	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0061	5190	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0062	5190	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0063	5190	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0064	5191	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0065	5191	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0066	5191	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0067	5191	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0068	5192	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0069	5192	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0070	5191	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0071	5190	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0072	5192	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0073	5192	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0074	5193	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0075	5190	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0076	5191	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0077	5190	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0078	5196	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0079	5191	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0080	5189	1	0	0	0	0	1	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0081	5189	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0082	5189	1	0	0	0	0	1	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0083	5190	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0084	5190	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0085	5190	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0086	5190	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0087	5190	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0088	5191	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0089	5190	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0090	5191	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0091	5182	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	t0092	5182	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP9_chr3_51928429_51946904	1/1	t0001	115	376	92	74	168	6	34	copy fasta	RRP9	chr3	51928429	51946904
RRS1_chr8_66424014_66435733	1/1	t0001	623	420	94	76	190	16	42	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	t0002	623	3	3	0	0	0	0	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	t0003	623	1	0	0	1	0	0	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	t0004	623	1	0	0	1	0	0	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	t0005	623	1	1	0	0	0	0	copy fasta	RRS1	chr8	66424014	66435733
RS1_chrX_18634688_18677108	0/1	t0001	2358	100	14	12	56	7	10	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0002	2359	73	10	17	35	2	9	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	1/0	t0003	2357	36	13	3	12	2	5	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0004	2360	30	9	9	10	0	2	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0005	2361	11	1	6	2	0	2	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0006	2356	10	6	2	1	0	1	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0007	2356	4	3	1	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0008	2357	3	2	0	0	0	1	copy fasta	RS1	chrX	18634688	18677108