Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B4GALT5_chr20_49627945_49718878	0/0	t0053	3562	1	0	0	0	0	1	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0054	3562	1	0	0	0	0	1	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0055	3565	1	0	0	0	0	1	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0056	3562	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0057	3562	1	0	0	0	0	1	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0058	3562	1	0	0	1	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0059	3556	1	0	1	0	0	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT5_chr20_49627945_49718878	0/0	t0060	3556	1	0	0	0	1	0	copy fasta	B4GALT5	chr20	49627945	49718878
B4GALT6_chr18_31617246_31689581	1/1	t0001	3524	97	6	19	59	4	7	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0002	3524	67	11	9	38	3	6	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0003	3524	26	9	7	3	2	5	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0004	3524	15	0	3	11	0	1	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0005	3524	14	12	1	1	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0006	3524	14	0	8	6	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0007	3524	11	9	2	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0008	3524	11	10	1	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0009	3524	11	0	6	3	1	1	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0010	3524	4	4	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0011	3524	3	3	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0012	3524	3	3	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0013	3524	2	1	0	1	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0014	3524	2	0	0	2	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0015	3524	2	2	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0016	3524	2	0	0	2	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0017	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0018	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0019	3524	1	0	0	0	0	1	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0020	3524	1	0	0	1	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0021	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0022	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0023	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0024	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0025	3524	1	0	1	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0026	3524	1	0	0	1	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0027	3524	1	0	0	0	0	1	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0028	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0029	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0030	3524	1	0	1	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0031	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0032	3524	1	1	0	0	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0033	3524	1	0	0	0	0	1	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0034	3524	1	0	0	1	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0035	3524	1	0	0	1	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0036	3524	1	0	0	1	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0037	3524	1	0	0	0	0	1	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT6_chr18_31617246_31689581	0/0	t0038	3524	1	0	0	1	0	0	copy fasta	B4GALT6	chr18	31617246	31689581
B4GALT7_chr5_177595132_177615330	1/1	t0001	715	447	92	86	206	18	43	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	t0002	715	3	0	0	2	0	1	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	t0003	715	2	2	0	0	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	t0004	715	1	0	0	1	0	0	copy fasta	B4GALT7	chr5	177595132	177615330