JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RS1_chrX_18634688_18677108	0/0	t0009	2355	3	3	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0010	2357	3	2	1	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0011	2358	3	3	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0012	2362	3	1	0	2	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0013	2358	2	1	1	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0014	2355	2	1	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0015	2360	2	0	1	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0016	2358	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0017	2359	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0018	2358	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0019	2356	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0020	2354	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0021	2358	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0022	2356	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0023	2357	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0024	2359	1	0	1	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0025	2357	1	0	1	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0026	2363	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0027	2362	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0028	2361	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0029	2359	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0030	2359	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0031	2360	1	0	1	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0032	2358	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0033	2358	1	0	0	0	0	1	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0034	2357	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0035	2359	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0036	2359	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0037	2359	1	0	0	0	0	1	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	t0038	2353	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RSAD1_chr17_50473860_50490974	1/1	t0001	1139	283	45	56	130	16	34	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	t0002	1144	44	16	6	17	1	4	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	t0003	1139	25	21	4	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	t0004	1144	18	4	7	0	1	6	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	t0005	1139	4	0	0	4	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	t0006	1139	3	1	2	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	t0007	1139	2	1	1	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	t0008	1144	1	0	0	1	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	t0009	1139	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	t0010	1139	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD2_chr2_6872777_6903239	0/0	t0001	2324	143	24	31	63	5	20	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	1/0	t0002	2322	47	11	8	22	1	4	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0003	2323	26	1	7	13	3	2	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0004	2323	14	0	1	6	2	5	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/1	t0005	2323	12	4	5	0	1	1	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0006	2325	12	5	1	0	1	5	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0007	2323	10	10	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0008	2325	8	7	1	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0009	2332	6	6	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0010	2326	6	0	0	6	0	0	copy fasta	RSAD2	chr2	6872777	6903239