JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSAD2_chr2_6872777_6903239	0/0	t0011	2324	5	0	3	2	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0012	2323	4	0	1	2	1	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0013	2325	4	4	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0014	2324	4	0	0	0	1	3	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0015	2325	4	4	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0016	2324	3	3	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0017	2324	3	3	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0018	2322	2	0	1	0	0	1	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0019	2323	2	2	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0020	2323	2	0	0	2	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0021	2326	2	1	0	0	0	1	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0022	2324	2	0	1	1	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0023	2325	2	0	0	2	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0024	2324	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0025	2322	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0026	2324	1	0	0	0	0	1	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0027	2323	1	0	0	0	0	1	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0028	2322	1	0	1	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0029	2323	1	0	0	1	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0030	2324	1	0	0	0	1	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0031	2332	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0032	2324	1	0	1	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0033	2325	1	0	0	0	0	1	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0034	2326	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0035	2324	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0036	2324	1	0	0	0	0	1	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0037	2326	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0038	2325	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0039	2324	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	t0040	2323	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSBN1L_chr7_77691459_77788022	1/0	t0001	3866	97	6	20	49	4	17	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/1	t0002	3867	50	4	10	28	1	6	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0003	3864	41	4	5	22	1	9	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0004	3866	37	14	4	10	8	1	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0005	3864	22	13	7	0	0	2	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0006	3867	9	1	3	2	1	2	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0007	3867	7	5	1	1	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0008	3864	7	7	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0009	3867	6	6	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0010	3868	5	0	1	2	0	2	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0011	3868	5	5	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0012	3865	4	4	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0013	3869	4	3	1	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0014	3866	3	1	1	1	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0015	3868	3	0	1	0	1	1	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0016	3868	3	1	2	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0017	3868	3	0	1	0	1	1	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0018	3867	2	2	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0019	3865	2	2	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	t0020	3864	2	2	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022