JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSKR_chr17_28602963_28619185	0/0	t0023	2542	2	0	2	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0024	2541	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0025	2539	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0026	2541	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0027	2540	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0028	2540	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0029	2541	1	0	0	0	0	1	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0030	2541	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0031	2540	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0032	2540	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0033	2542	1	0	0	0	0	1	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0034	2543	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0035	2542	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0036	2542	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0037	2541	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0038	2543	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0039	2542	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0040	2540	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0041	2540	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0042	2541	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	t0043	2541	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSL1D1_chr16_11828850_11856542	0/0	t0001	3968	99	2	14	63	4	16	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0002	3967	58	4	15	38	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0003	3968	47	7	14	13	5	8	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0004	3968	42	6	8	20	0	8	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/1	t0005	3968	34	6	16	2	5	4	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0006	3968	20	16	2	0	0	2	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0007	3968	14	11	3	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0008	3968	8	0	0	8	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0009	3970	7	6	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0010	3968	6	5	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0011	3968	6	6	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0012	3969	4	0	0	4	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0013	3968	4	4	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0014	3968	4	0	0	4	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0015	3968	3	3	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0016	3968	3	3	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0017	3968	3	0	2	0	1	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0018	3968	2	2	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0019	3967	2	2	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0020	3969	2	1	0	0	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0021	3968	2	0	0	2	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0022	3967	2	0	0	2	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0023	4021	2	2	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0024	3968	1	0	0	0	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0025	3968	1	1	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0026	3986	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0027	3968	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0028	3967	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0029	3968	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542