JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSL1D1_chr16_11828850_11856542	0/0	t0030	3968	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0031	3968	1	0	0	0	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0032	3967	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0033	3968	1	0	0	0	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0034	3967	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0035	3968	1	1	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0036	3968	1	0	0	0	1	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0037	3969	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0038	3968	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0039	3968	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	1/0	t0040	3968	1	0	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0041	3968	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0042	3968	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0043	3968	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0044	3968	1	0	0	0	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0045	3968	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0046	3968	1	1	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0047	3968	1	1	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0048	3968	1	1	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0049	3968	1	0	0	0	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0050	3967	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0051	3968	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0052	3968	1	1	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0053	3968	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0054	3968	1	0	0	0	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	t0055	3967	1	0	0	1	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL24D1_chr15_55175806_55201941	1/1	t0001	1398	184	18	32	97	12	23	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0002	1394	60	17	11	21	3	8	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0003	1398	43	32	4	3	1	3	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0004	1398	7	7	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0005	1398	6	6	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0006	1398	5	5	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0007	1398	5	5	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0008	1394	3	0	0	3	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0009	1398	3	1	0	2	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0010	1398	2	0	1	0	0	1	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0011	1394	1	1	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0012	1398	1	1	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0013	1398	1	1	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0014	1398	1	1	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0015	1398	1	0	0	1	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0016	1398	1	0	0	1	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0017	1394	1	1	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	t0018	1398	1	0	0	0	0	1	copy fasta	RSL24D1	chr15	55175806	55201941
RSPH10B2_chr7_6749103_6803765	0/0	t0001	498	56	11	8	18	1	18	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	t0002	500	37	5	12	16	1	3	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	t0003	500	7	6	1	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	t0004	498	4	0	1	2	0	1	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	t0005	497	2	2	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	t0006	500	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765