JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSPH10B2_chr7_6749103_6803765	0/0	t0007	500	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B_chr7_5921136_5975689	0/0	t0001	508	35	9	9	13	3	1	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	t0002	510	18	9	3	2	4	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	t0003	510	12	2	5	1	3	1	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	t0004	508	3	1	2	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	t0005	508	1	1	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	t0006	508	1	0	1	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH14_chr22_23054415_23146990	1/1	t0001	142	300	77	57	114	14	36	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	t0002	142	12	11	1	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	t0003	142	2	2	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH1_chr21_42467486_42501224	0/1	t0001	371	191	60	43	55	8	24	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	t0002	371	110	12	19	61	6	12	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	1/0	t0003	371	75	15	7	49	1	2	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	t0004	371	18	0	5	8	1	4	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	t0005	371	4	0	2	0	2	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	t0006	371	3	0	0	3	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	t0007	371	2	0	0	0	0	2	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	t0008	371	2	2	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	t0009	371	1	0	0	1	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	t0010	371	1	0	0	1	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	t0011	351	1	1	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH3_chr6_158967871_159005202	1/1	t0001	5320	152	35	32	71	1	11	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0002	5321	73	7	12	47	0	7	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0003	5320	5	0	4	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0004	5320	5	5	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0005	5320	4	2	2	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0006	5320	4	4	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0007	5321	4	1	1	0	1	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0008	5321	3	0	2	0	0	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0009	5320	3	2	1	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0010	5320	3	0	1	0	1	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0011	5321	2	2	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0012	5320	2	2	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0013	5320	2	2	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0014	5320	2	2	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0015	5320	2	2	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0016	5320	2	0	0	2	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0017	5320	2	2	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0018	5321	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0019	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0020	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0021	5320	1	0	0	0	0	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0022	5320	1	0	0	0	0	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0023	5320	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0024	5320	1	0	0	0	1	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0025	5320	1	0	0	0	0	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0026	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0027	5320	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0028	5320	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0029	5320	1	0	1	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202