JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSPH3_chr6_158967871_159005202	0/0	t0030	5320	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0031	5321	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0032	5321	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0033	5321	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0034	5321	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0035	5321	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0036	5321	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0037	5321	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0038	5320	1	0	1	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0039	5319	1	0	1	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0040	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0041	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0042	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0043	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0044	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0045	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0046	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0047	5320	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0048	5321	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	t0049	5321	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH4A_chr6_116611479_116637985	1/1	t0001	690	241	55	39	111	11	23	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0002	690	96	6	15	61	5	9	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0003	690	40	15	12	5	0	8	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0004	702	8	8	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0005	686	3	3	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0006	690	2	0	0	0	2	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0007	690	2	2	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0008	690	1	0	0	0	0	1	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0009	690	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0010	690	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0011	690	1	0	0	1	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0012	690	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	t0013	690	1	0	0	0	0	1	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH6A_chr19_45790713_45820308	1/1	t0001	289	412	78	76	198	18	40	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	t0002	289	11	9	2	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	t0003	289	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH9_chr6_43640036_43677600	1/1	t0001	1715	198	38	42	84	10	22	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0002	1715	69	2	4	49	3	11	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0003	1715	17	4	4	8	0	1	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0004	1715	10	10	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0005	1715	8	8	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0006	1715	7	6	1	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0007	1715	6	6	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0008	1715	6	6	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0009	1715	4	4	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0010	1715	3	3	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0011	1715	2	0	2	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0012	1715	2	2	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0013	1715	1	0	1	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0014	1715	1	0	0	1	0	0	copy fasta	RSPH9	chr6	43640036	43677600