JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSPH9_chr6_43640036_43677600	0/0	t0015	1715	1	0	0	0	0	1	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0016	1715	1	1	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0017	1715	1	0	0	0	0	1	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0018	1715	1	1	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0019	1715	1	1	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0020	1715	1	0	0	0	1	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0021	1715	1	1	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	t0022	1715	1	1	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPO1_chr1_37606350_37639892	0/0	t0001	2090	185	16	36	109	5	19	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/1	t0002	2092	93	12	14	55	4	7	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0003	2159	56	29	7	6	3	11	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0004	2092	18	0	7	11	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0005	2088	16	15	1	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0006	2088	10	0	4	3	1	2	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0007	2088	6	6	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0008	2090	5	4	0	1	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0009	2092	3	0	1	0	0	2	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0010	2090	3	3	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0011	2090	3	0	0	3	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0012	2090	2	2	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0013	2090	2	0	1	0	1	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0014	2090	2	0	0	0	0	2	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0015	2092	2	0	0	0	2	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0016	2092	2	2	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0017	2090	2	2	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0018	2090	2	2	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0019	2090	1	0	0	1	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0020	2090	1	0	0	1	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0021	2090	1	0	0	1	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0022	2090	1	0	0	1	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0023	2092	1	0	1	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0024	2090	1	1	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0025	2088	1	1	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	1/0	t0026	2088	1	0	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0027	2090	1	0	0	0	0	1	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	t0028	2088	1	1	0	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO2_chr8_107894316_108088620	0/0	t0001	2353	102	7	31	43	7	14	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	1/1	t0002	2353	66	31	8	16	0	9	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0003	2354	33	2	3	20	0	8	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0004	2353	5	4	1	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0005	2353	5	5	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0006	2354	4	0	4	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0007	2353	3	3	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0008	2353	3	3	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0009	2353	3	3	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0010	2353	2	2	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0011	2353	2	0	0	1	0	1	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0012	2354	1	0	0	0	0	1	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0013	2354	1	1	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0014	2353	1	0	1	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620