Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B4GALT7_chr5_177595132_177615330	0/0	t0005	715	1	0	0	1	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	t0006	715	1	1	0	0	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	t0007	715	1	1	0	0	0	0	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	t0008	715	1	0	0	0	0	1	copy fasta	B4GALT7	chr5	177595132	177615330
B4GALT7_chr5_177595132_177615330	0/0	t0009	715	1	0	0	0	0	1	copy fasta	B4GALT7	chr5	177595132	177615330
B4GAT1_chr11_66340374_66352629	1/1	t0001	760	392	89	71	176	18	36	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	t0002	760	9	0	1	8	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	t0003	760	6	0	2	4	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	t0004	757	4	0	0	4	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B4GAT1_chr11_66340374_66352629	0/0	t0005	760	1	1	0	0	0	0	copy fasta	B4GAT1	chr11	66340374	66352629
B9D1_chr17_19338175_19367723	1/1	t0001	299	311	89	60	108	10	42	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	t0002	299	23	0	0	23	0	0	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	t0003	299	15	1	0	11	0	3	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	t0004	299	1	1	0	0	0	0	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	t0005	299	1	0	0	1	0	0	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	t0006	299	1	0	0	0	0	1	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	t0007	299	1	0	0	1	0	0	copy fasta	B9D1	chr17	19338175	19367723
B9D1_chr17_19338175_19367723	0/0	t0008	299	1	1	0	0	0	0	copy fasta	B9D1	chr17	19338175	19367723
B9D2_chr19_41349417_41369149	1/1	t0001	480	340	70	70	147	11	40	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	t0002	480	8	3	4	0	1	0	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	t0003	480	5	5	0	0	0	0	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	t0004	480	3	3	0	0	0	0	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	t0005	480	1	1	0	0	0	0	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	t0006	480	1	0	0	0	0	1	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	t0007	480	1	0	0	0	0	1	copy fasta	B9D2	chr19	41349417	41369149
B9D2_chr19_41349417_41369149	0/0	t0008	480	1	0	0	1	0	0	copy fasta	B9D2	chr19	41349417	41369149
BAALC_chr8_103135725_103235305	1/0	t0001	2380	153	25	30	67	7	23	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/1	t0002	2377	72	14	11	38	1	7	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0003	2380	25	10	3	2	4	6	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0004	2380	14	0	0	14	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0005	2380	11	7	1	0	1	2	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0006	2380	11	5	4	0	1	1	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0007	2377	9	0	9	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0008	2380	6	3	3	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0009	2380	5	1	0	2	2	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0010	2377	5	5	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0011	2380	4	0	0	4	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0012	2380	2	0	0	0	0	2	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0013	2380	2	2	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0014	2380	2	2	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0015	2380	2	2	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0016	2380	1	0	0	1	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0017	2380	1	1	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0018	2380	1	0	0	0	0	1	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0019	2380	1	0	0	1	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0020	2380	1	1	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0021	2380	1	0	1	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0022	2380	1	0	0	1	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0023	2377	1	1	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305
BAALC_chr8_103135725_103235305	0/0	t0024	2380	1	1	0	0	0	0	copy fasta	BAALC	chr8	103135725	103235305