JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSPO2_chr8_107894316_108088620	0/0	t0015	2353	1	1	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0016	2353	1	0	0	0	1	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0017	2353	1	1	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0018	2353	1	0	0	0	0	1	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0019	2353	1	0	1	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0020	2353	1	1	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0021	2353	1	1	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0022	2353	1	0	1	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	t0023	2353	1	1	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO3_chr6_127113671_127204481	1/0	t0001	3997	123	23	18	69	4	8	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/1	t0002	3997	106	18	24	49	4	10	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0003	3998	13	13	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0004	3997	13	1	7	0	2	3	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0005	3994	9	8	1	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0006	3995	6	6	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0007	3994	6	2	3	0	1	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0008	3997	6	1	1	1	0	3	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0009	3997	4	0	0	4	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0010	3997	3	1	2	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0011	3998	3	3	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0012	3997	2	1	1	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0013	3997	2	0	0	2	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0014	3995	2	2	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0015	3997	1	0	0	1	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0016	3998	1	1	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0017	3998	1	1	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0018	3997	1	0	0	0	1	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0019	3997	1	0	1	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0020	3995	1	1	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0021	3997	1	0	0	1	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0022	3997	1	1	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0023	3997	1	1	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0024	3997	1	0	1	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0025	3997	1	0	0	1	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	t0026	3994	1	0	1	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO4_chr20_953452_1007311	1/1	t0001	2053	101	6	24	51	3	15	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0002	2053	39	3	1	23	4	8	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0003	1987	35	2	2	28	0	3	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0004	2053	32	0	6	25	0	1	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0005	2053	16	1	3	10	0	2	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0006	1987	14	0	2	12	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0007	2053	12	11	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0008	2053	10	0	3	0	0	7	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0009	2053	9	8	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0010	2053	8	8	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0011	1987	7	0	0	7	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0012	2031	6	6	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0013	2053	6	5	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0014	2053	5	5	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0015	2075	5	5	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311