JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSPO4_chr20_953452_1007311	0/0	t0016	2185	5	0	0	5	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0017	2053	4	4	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0018	2031	4	4	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0019	2053	3	0	0	3	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0020	2053	3	0	3	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0021	2053	3	3	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0022	2053	3	1	1	0	1	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0023	1987	2	2	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0024	2053	2	2	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0025	1987	2	2	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0026	1987	2	0	2	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0027	2053	2	0	1	0	1	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0028	2053	1	0	0	0	1	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0029	2053	1	0	0	0	1	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0030	2053	1	0	0	0	1	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0031	1987	1	0	0	1	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0032	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0033	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0034	1987	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0035	2009	1	0	0	1	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0036	2053	1	0	0	1	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0037	2053	1	0	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0038	2053	1	0	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0039	2053	1	0	0	1	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0040	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0041	2097	1	0	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0042	1987	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0043	2073	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0044	1965	1	0	0	1	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0045	2075	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0046	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0047	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0048	2031	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0049	2053	1	0	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0050	2053	1	0	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0051	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0052	2097	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0053	1987	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0054	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0055	2031	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0056	2053	1	0	0	1	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0057	1987	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0058	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0059	1987	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0060	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0061	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0062	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	t0063	2053	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPRY1_chr16_57181329_57245469	1/0	t0001	1773	188	61	45	64	8	9	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0002	1771	74	0	10	47	4	13	copy fasta	RSPRY1	chr16	57181329	57245469