JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSPRY1_chr16_57181329_57245469	0/0	t0003	1764	40	0	1	31	0	8	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0004	1765	9	5	0	4	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0005	1773	7	4	2	0	0	1	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/1	t0006	1775	6	1	1	0	2	1	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0007	1773	4	4	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0008	1775	4	1	1	2	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0009	1772	3	0	0	3	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0010	1772	3	2	1	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0011	1771	2	0	0	2	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0012	1774	2	2	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0013	1765	2	0	0	2	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0014	1772	2	0	0	2	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0015	1773	1	1	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0016	1765	1	1	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0017	1775	1	0	0	1	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0018	1774	1	1	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0019	1773	1	0	1	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0020	1772	1	1	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0021	1773	1	1	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0022	1773	1	1	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0023	1771	1	0	0	1	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0024	1772	1	0	0	1	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0025	1772	1	1	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	t0026	1751	1	1	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSRC1_chr3_158105089_158550730	1/1	t0001	1593	69	14	12	33	2	6	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0002	1593	53	23	6	15	3	6	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0003	1609	18	2	5	5	0	6	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0004	1596	16	4	3	8	1	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0005	1608	12	0	1	8	2	1	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0006	1594	11	7	2	0	1	1	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0007	1595	11	4	2	4	1	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0008	1610	10	1	2	4	0	3	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0009	1595	8	8	0	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0010	1595	8	0	7	0	0	1	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0011	1597	8	0	0	7	0	1	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0012	1593	5	5	0	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0013	1593	5	3	1	1	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0014	1597	5	1	0	3	0	1	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0015	1593	4	0	0	4	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0016	1594	4	0	1	1	1	1	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0017	1607	4	0	2	1	1	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0018	1621	4	0	0	4	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0019	1594	3	0	2	0	0	1	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0020	1606	3	0	0	3	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0021	1593	2	2	0	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0022	1596	2	2	0	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0023	1593	2	0	2	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0024	1593	1	0	0	0	0	1	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0025	1594	1	0	0	1	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0026	1593	1	0	1	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730