JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSRC1_chr3_158105089_158550730	0/0	t0027	1594	1	0	0	1	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0028	1596	1	0	0	0	0	1	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0029	1608	1	0	0	1	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0030	1611	1	0	1	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0031	1615	1	0	0	1	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	t0032	1622	1	0	0	1	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC2_chr12_122498454_122531936	0/0	t0001	2157	97	6	10	60	4	17	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0002	2157	73	1	23	39	2	8	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	1/0	t0003	2157	54	8	14	21	7	3	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0004	2157	25	1	0	23	0	1	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0005	2157	16	0	7	3	0	6	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0006	2157	14	13	1	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/1	t0007	2157	14	4	4	5	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0008	2157	10	9	1	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0009	2157	7	7	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0010	2157	6	0	0	6	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0011	2157	6	6	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0012	2157	5	5	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0013	2157	5	0	1	0	1	3	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0014	2157	4	0	3	0	0	1	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0015	2157	4	4	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0016	2157	4	0	0	4	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0017	2157	4	2	0	2	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0018	2157	3	3	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0019	2157	3	0	0	3	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0020	2157	3	0	2	0	0	1	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0021	2157	3	1	0	0	0	2	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0022	2157	3	3	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0023	2157	2	2	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0024	2157	2	0	0	0	2	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0025	2157	2	2	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0026	2157	1	0	0	0	0	1	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0027	2157	1	0	0	1	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0028	2157	1	0	1	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0029	2157	1	0	0	1	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0030	2157	1	1	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0031	2157	1	0	0	0	0	1	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0032	2157	1	0	1	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0033	2157	1	0	0	1	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0034	2157	1	1	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0035	2157	1	1	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0036	2157	1	1	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0037	2157	1	1	0	0	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	t0038	2128	1	0	0	1	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRP1_chr1_25237249_25252454	1/1	t0001	553	340	89	67	124	18	40	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/0	t0002	553	2	0	0	0	0	2	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/0	t0003	553	1	1	0	0	0	0	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/0	t0004	553	1	0	1	0	0	0	copy fasta	RSRP1	chr1	25237249	25252454
RSU1_chr10_16585611_16822424	1/0	t0001	2897	46	2	8	28	2	5	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0002	2897	18	7	5	4	0	2	copy fasta	RSU1	chr10	16585611	16822424