JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSU1_chr10_16585611_16822424	0/0	t0003	2897	13	2	3	8	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0004	2897	10	9	1	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0005	2897	8	2	5	1	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0006	2896	6	6	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0007	2899	5	1	0	4	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0008	2901	4	0	0	3	0	1	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0009	2901	3	3	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0010	2897	3	3	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0011	2897	3	3	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0012	2897	3	3	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0013	2897	3	3	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/1	t0014	2901	3	1	1	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0015	2901	3	0	0	0	3	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0016	2896	2	2	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0017	2897	2	1	1	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0018	2901	2	2	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0019	2897	2	2	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0020	2896	2	2	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0021	2901	2	2	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0022	2897	2	0	1	0	1	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0023	2901	2	2	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0024	2898	2	2	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0025	2897	2	0	2	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0026	2901	2	0	1	1	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0027	2897	2	1	1	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0028	2896	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0029	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0030	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0031	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0032	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0033	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0034	2897	1	0	1	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0035	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0036	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0037	2896	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0038	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0039	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0040	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0041	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0042	2831	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0043	2898	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0044	2898	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0045	2898	1	0	1	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0046	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0047	2897	1	0	0	0	0	1	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0048	2896	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0049	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0050	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0051	2897	1	0	1	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0052	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424