JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RSU1_chr10_16585611_16822424	0/0	t0053	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0054	2899	1	0	0	0	0	1	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0055	2831	1	0	1	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0056	2898	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0057	2898	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0058	2897	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0059	2896	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0060	2896	1	0	1	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0061	2896	1	1	0	0	0	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	t0062	2897	1	0	0	1	0	0	copy fasta	RSU1	chr10	16585611	16822424
RTBDN_chr19_12820482_12839579	1/1	t0001	334	404	73	71	200	16	42	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	t0002	334	23	22	1	0	0	0	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	t0003	334	1	1	0	0	0	0	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	t0004	334	1	0	0	1	0	0	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	t0005	334	1	0	0	1	0	0	copy fasta	RTBDN	chr19	12820482	12839579
RTCA_chr1_100261216_100297769	0/1	t0001	1427	195	45	38	82	7	22	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0002	1427	35	17	6	8	2	2	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	1/0	t0003	1426	18	13	0	3	0	1	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0004	1426	14	2	0	9	0	3	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0005	1428	8	1	1	6	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0006	1427	6	0	4	0	2	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0007	1427	3	0	2	0	1	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0008	1427	3	3	0	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0009	1416	3	3	0	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0010	1444	2	2	0	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0011	1427	2	0	0	0	0	2	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0012	1427	1	0	0	1	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0013	1427	1	1	0	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0014	1427	1	0	0	1	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0015	1427	1	0	1	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0016	1427	1	0	0	1	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0017	1427	1	0	0	1	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	t0018	1444	1	1	0	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCB_chr22_32382582_32417247	1/1	t0001	502	404	79	71	191	14	47	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	t0002	502	13	12	1	0	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	t0003	502	11	2	7	0	0	2	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	t0004	502	3	0	0	3	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	t0005	502	3	0	0	2	0	1	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	t0006	502	1	1	0	0	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	t0007	502	1	0	1	0	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	t0008	502	1	0	0	1	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	t0009	502	1	0	0	1	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTEL1_chr20_63653312_63701245	0/1	t0001	713	32	17	9	1	3	1	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	t0002	713	19	12	5	0	0	2	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	t0003	713	5	5	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	1/0	t0004	713	4	0	0	1	1	1	copy fasta	RTEL1	chr20	63653312	63701245
RTF1_chr15_41412095_41488563	0/1	t0001	2898	59	15	13	24	1	5	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	1/0	t0002	2898	33	1	6	17	4	4	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0003	2896	26	7	10	1	5	3	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0004	2896	23	1	6	14	1	1	copy fasta	RTF1	chr15	41412095	41488563