JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTF1_chr15_41412095_41488563	0/0	t0005	2895	15	6	4	0	2	3	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0006	2897	11	0	3	4	0	4	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0007	2899	10	2	1	2	0	5	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0008	2899	7	0	0	3	1	3	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0009	2897	7	4	2	1	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0010	2898	4	4	0	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0011	2896	4	3	1	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0012	2896	3	3	0	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0013	2896	3	0	0	3	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0014	2896	2	2	0	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0015	2898	2	2	0	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0016	2897	2	0	1	0	0	1	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0017	2896	2	0	0	0	0	2	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0018	2898	1	1	0	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0019	2898	1	0	0	0	0	1	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0020	2897	1	0	1	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0021	2898	1	1	0	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0022	2898	1	0	0	1	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0023	2898	1	1	0	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0024	2898	1	0	0	1	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0025	2898	1	0	0	0	0	1	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0026	2896	1	0	0	0	0	1	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0027	2897	1	1	0	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0028	2897	1	0	0	1	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0029	2897	1	0	0	1	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	t0030	2897	1	0	0	1	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF2_chr20_56463627_56524449	1/0	t0001	1256	277	57	37	153	8	21	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/1	t0002	1256	96	29	27	16	6	17	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	t0003	1248	5	0	0	5	0	0	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	t0004	1256	3	0	3	0	0	0	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	t0005	1256	2	0	0	0	0	2	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	t0006	1256	1	0	0	1	0	0	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	t0007	1256	1	0	0	1	0	0	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	t0008	1256	1	1	0	0	0	0	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	t0009	1256	1	1	0	0	0	0	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	t0010	1256	1	0	1	0	0	0	copy fasta	RTF2	chr20	56463627	56524449
RTKN2_chr10_62188086_62273844	0/0	t0001	5053	31	4	5	15	3	4	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0002	5029	23	1	0	18	0	4	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0003	5053	18	2	0	14	0	2	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/1	t0004	5029	12	7	0	0	1	3	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0005	5057	11	2	4	3	1	1	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0006	5053	10	7	0	3	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0007	5057	9	2	3	3	1	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0008	5041	8	4	3	0	1	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0009	5049	8	7	1	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0010	5065	5	2	2	0	0	1	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0011	5053	4	0	0	4	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0012	5053	4	2	1	0	0	1	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0013	5057	4	0	2	0	1	1	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0014	5041	3	0	1	2	0	0	copy fasta	RTKN2	chr10	62188086	62273844