JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTKN2_chr10_62188086_62273844	0/0	t0065	5037	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0066	5041	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0067	5037	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0068	5045	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0069	5049	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0070	5033	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0071	5041	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0072	5045	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0073	5049	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0074	5049	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0075	5057	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0076	5029	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0077	5029	1	0	0	0	0	1	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0078	5041	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0079	5037	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0080	5053	1	0	1	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0081	5057	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0082	5045	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0083	5029	1	0	0	0	1	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0084	5045	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0085	5053	1	0	0	0	0	1	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0086	5053	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0087	5053	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0088	5057	1	0	1	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0089	5061	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0090	5077	1	0	1	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	1/0	t0091	5057	1	0	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0092	5061	1	0	0	0	0	1	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0093	5065	1	0	0	0	0	1	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0094	5073	1	0	1	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0095	5057	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	t0096	5057	1	0	1	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN_chr2_74420835_74446937	1/1	t0001	530	365	83	63	174	14	29	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	t0002	530	8	7	1	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	t0003	530	4	4	0	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	t0004	530	2	0	1	0	0	1	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	t0005	530	2	1	1	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	t0006	530	1	1	0	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTL10_chr22_19841146_19859874	1/0	t0001	5559	144	11	28	75	6	23	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0002	5561	75	4	6	59	4	2	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0003	5561	14	0	1	10	2	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0004	5560	10	0	4	3	0	3	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0005	5577	6	0	4	0	2	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0006	5560	6	0	0	6	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0007	5560	6	5	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0008	5559	5	0	0	5	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0009	5563	5	5	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0010	5585	4	0	0	3	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0011	5589	4	0	3	0	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0012	5567	4	4	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874