JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTL10_chr22_19841146_19859874	0/0	t0013	5567	4	4	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0014	5556	4	4	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0015	5586	3	0	0	3	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0016	5586	3	0	3	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0017	5587	3	0	1	0	2	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0018	5559	3	3	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0019	5561	3	3	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0020	5564	3	3	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0021	5561	3	2	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0022	5568	3	3	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0023	5561	3	0	2	0	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0024	5584	3	0	0	0	0	3	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0025	5576	2	2	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0026	5571	2	0	0	2	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0027	5584	2	0	0	0	0	2	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0028	5560	2	1	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0029	5559	2	0	1	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0030	5559	2	0	0	2	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0031	5559	2	0	0	2	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0032	5559	2	0	1	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0033	5572	2	2	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0034	5554	2	2	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0035	5561	2	2	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0036	5568	2	2	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0037	5559	2	0	0	2	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0038	5556	2	2	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0039	5569	2	2	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0040	5585	2	0	1	0	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0041	5577	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0042	5575	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0043	5575	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0044	5578	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0045	5579	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0046	5559	1	0	0	0	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0047	5563	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0048	5564	1	0	0	0	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0049	5573	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0050	5574	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0051	5575	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0052	5578	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0053	5588	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0054	5582	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0055	5559	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0056	5559	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0057	5560	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0058	5560	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0059	5561	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0060	5561	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0061	5561	1	0	0	0	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0062	5560	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874