Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAAT_chr9_101355417_101390006	0/1	t0001	2223	173	17	28	108	9	10	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	1/0	t0002	2223	112	26	16	52	2	15	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0003	2223	28	0	4	19	0	5	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0004	2223	21	17	4	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0005	2223	17	2	7	3	1	4	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0006	2223	15	2	1	9	0	3	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0007	2221	10	0	4	0	0	6	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0008	2223	7	7	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0009	2223	7	7	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0010	2223	5	5	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0011	2223	3	3	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0012	2223	3	0	0	3	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0013	2223	3	0	1	0	2	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0014	2223	2	0	0	2	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0015	2223	1	0	1	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0016	2223	1	0	0	0	0	1	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0017	2223	1	1	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0018	2223	1	1	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0019	2223	1	0	1	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0020	2223	1	0	0	0	0	1	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0021	2223	1	1	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0022	2223	1	0	1	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0023	2223	1	0	0	0	0	1	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0024	2223	1	0	0	1	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0025	2223	1	1	0	0	0	0	copy fasta	BAAT	chr9	101355417	101390006
BAAT_chr9_101355417_101390006	0/0	t0026	2223	1	0	0	1	0	0	copy fasta	BAAT	chr9	101355417	101390006
BABAM1_chr19_17262443_17284337	1/1	t0001	388	422	95	75	186	18	46	copy fasta	BABAM1	chr19	17262443	17284337
BABAM1_chr19_17262443_17284337	0/0	t0002	388	1	0	1	0	0	0	copy fasta	BABAM1	chr19	17262443	17284337
BABAM1_chr19_17262443_17284337	0/0	t0003	388	1	1	0	0	0	0	copy fasta	BABAM1	chr19	17262443	17284337
BABAM2_chr2_27885729_28343901	1/1	t0001	527	79	26	20	18	2	11	copy fasta	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	t0002	527	66	32	16	13	0	5	copy fasta	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	t0003	527	11	8	2	1	0	0	copy fasta	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	t0004	527	1	1	0	0	0	0	copy fasta	BABAM2	chr2	27885729	28343901
BABAM2_chr2_27885729_28343901	0/0	t0005	527	1	1	0	0	0	0	copy fasta	BABAM2	chr2	27885729	28343901
BACE1_chr11_117280698_117321256	0/1	t0001	4330	218	54	34	94	6	29	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0002	4330	40	10	13	10	6	1	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0003	4330	34	4	5	16	0	9	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0004	4330	27	0	5	19	3	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0005	4330	19	0	2	16	0	1	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0006	4330	10	6	4	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0007	4330	7	0	0	7	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0008	4330	7	2	4	1	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	1/0	t0009	4330	4	0	2	0	1	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0010	4330	4	3	1	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0011	4330	3	3	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0012	4330	2	0	0	0	0	2	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0013	4330	2	0	1	0	1	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0014	4330	2	0	0	2	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0015	4330	2	0	2	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0016	4330	2	2	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256