JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTL10_chr22_19841146_19859874	0/0	t0063	5588	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0064	5591	1	0	0	0	1	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0065	5592	1	0	0	0	1	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0066	5561	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0067	5574	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0068	5559	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0069	5559	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0070	5560	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0071	5559	1	0	0	0	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0072	5559	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0073	5558	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0074	5559	1	0	0	0	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0075	5560	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0076	5560	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/1	t0077	5559	1	0	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0078	5573	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0079	5561	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0080	5570	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0081	5571	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0082	5574	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0083	5560	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0084	5559	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0085	5556	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0086	5556	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0087	5566	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0088	5576	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0089	5577	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0090	5578	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0091	5581	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0092	5585	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0093	5588	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0094	5555	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0095	5570	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0096	5556	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0097	5567	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0098	5577	1	0	0	0	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0099	5585	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0100	5590	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0101	5591	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0102	5588	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0103	5590	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0104	5559	1	0	1	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	t0105	5561	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL1_chr14_100874753_100908722	0/0	t0001	1322	190	10	42	105	6	27	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0002	1322	71	22	5	43	0	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/1	t0003	1322	46	18	11	10	2	4	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0004	1322	18	17	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0005	1321	15	0	7	0	5	3	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	1/0	t0006	1322	14	4	4	0	3	2	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0007	1321	11	0	6	0	0	5	copy fasta	RTL1	chr14	100874753	100908722