JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTL1_chr14_100874753_100908722	0/0	t0008	1322	10	3	3	0	2	2	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0009	1322	10	0	3	5	0	2	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0010	1322	8	0	0	8	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0011	1322	7	7	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0012	1322	5	3	2	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0013	1323	3	0	1	2	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0014	1322	3	2	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0015	1322	2	2	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0016	1322	2	2	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0017	1323	2	0	0	2	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0018	1322	2	2	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0019	1322	2	2	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0020	1323	1	0	0	0	0	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0021	1322	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0022	1322	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0023	1322	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0024	1323	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0025	1322	1	0	0	0	0	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0026	1323	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0027	1322	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	t0028	1322	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL3_chrX_78651068_78664328	1/1	t0001	1222	254	25	56	140	8	23	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0002	1223	52	34	8	3	4	3	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0003	1223	3	3	0	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0004	1222	3	3	0	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0005	1224	2	1	1	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0006	1223	1	1	0	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0007	1214	1	0	0	1	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0008	1223	1	0	0	1	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0009	1224	1	1	0	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0010	1222	1	0	0	1	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0011	1223	1	0	0	0	1	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0012	1223	1	0	0	1	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	t0013	1222	1	0	0	1	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL4_chrX_112078016_112462514	1/1	t0001	2519	61	7	12	29	2	9	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0002	2518	46	18	2	21	2	3	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0003	2519	4	4	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0004	2518	4	4	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0005	2519	3	3	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0006	2519	2	0	1	0	0	1	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0007	2518	1	1	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0008	2519	1	0	0	0	0	1	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0009	2519	1	0	0	1	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0010	2519	1	0	0	0	0	1	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0011	2518	1	0	1	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0012	2520	1	0	1	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0013	2519	1	0	0	1	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0014	2518	1	0	1	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0015	2517	1	0	0	0	0	1	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0016	2519	1	0	0	0	1	0	copy fasta	RTL4	chrX	112078016	112462514