JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTL4_chrX_112078016_112462514	0/0	t0017	2519	1	1	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0018	2518	1	1	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0019	2518	1	1	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	t0020	2519	1	0	1	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL5_chrX_72122110_72136915	0/1	t0001	3097	197	45	17	116	0	18	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0002	3117	46	4	26	1	6	9	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0003	3117	19	4	1	10	0	4	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	1/0	t0004	3097	6	5	0	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0005	3097	5	4	1	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0006	3117	4	0	0	4	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0007	3097	4	4	0	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0008	3097	3	3	0	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0009	3097	3	0	0	3	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0010	3101	2	2	0	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0011	3097	2	2	0	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0012	3121	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0013	3117	1	0	1	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0014	3097	1	0	1	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0015	3117	1	0	0	0	1	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0016	3117	1	0	1	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0017	3099	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0018	3098	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0019	3097	1	1	0	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0020	3095	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0021	3097	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0022	3097	1	0	0	0	0	1	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0023	3097	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0024	3094	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0025	3098	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0026	3097	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0027	3097	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	t0028	3097	1	0	1	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL6_chr22_44487583_44503233	0/0	t0001	4700	84	7	3	65	1	8	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0002	4700	79	16	28	22	6	7	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0003	4683	71	3	14	37	5	12	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0004	4683	41	4	0	31	3	3	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0005	4684	15	14	0	0	0	1	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0006	4684	10	6	0	4	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0007	4700	9	0	9	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0008	4683	8	7	1	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0009	4700	7	0	0	7	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/1	t0010	4683	6	2	2	0	0	1	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0011	4700	6	5	1	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0012	4683	6	0	1	0	0	5	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0013	4683	5	5	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0014	4700	5	0	0	5	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0015	4700	3	0	0	0	0	3	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0016	4682	3	3	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0017	4683	3	1	1	0	1	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0018	4683	3	3	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233