JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTL6_chr22_44487583_44503233	0/0	t0019	4700	3	0	0	3	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0020	4683	2	2	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0021	4683	2	2	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0022	4700	2	2	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0023	4700	2	0	0	2	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0024	4683	2	2	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0025	4700	1	0	0	1	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0026	4700	1	0	1	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0027	4700	1	0	0	0	0	1	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0028	4685	1	0	1	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0029	4683	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0030	4684	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0031	4683	1	0	1	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0032	4682	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0033	4682	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0034	4683	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0035	4683	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0036	4700	1	0	0	1	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0037	4700	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0038	4683	1	0	1	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0039	4685	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0040	4683	1	0	0	0	0	1	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0041	4683	1	0	0	0	0	1	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0042	4683	1	0	0	0	0	1	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0043	4700	1	0	0	1	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	1/0	t0044	4700	1	0	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0045	4700	1	0	0	1	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0046	4700	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0047	4700	1	0	0	1	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0048	4683	1	0	0	1	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL6_chr22_44487583_44503233	0/0	t0049	4700	1	1	0	0	0	0	copy fasta	RTL6	chr22	44487583	44503233
RTL8A_chrX_135045932_135057135	1/1	t0001	863	316	72	57	144	7	34	copy fasta	RTL8A	chrX	135045932	135057135
RTL8A_chrX_135045932_135057135	0/0	t0002	863	1	1	0	0	0	0	copy fasta	RTL8A	chrX	135045932	135057135
RTL8A_chrX_135045932_135057135	0/0	t0003	861	1	0	1	0	0	0	copy fasta	RTL8A	chrX	135045932	135057135
RTL8B_chrX_135015513_135027542	0/0	t0001	1689	118	29	20	52	1	16	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	1/1	t0002	1689	106	22	15	55	1	11	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0003	1689	41	3	10	19	7	2	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0004	1689	11	10	1	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0005	1689	5	0	3	0	2	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0006	1689	3	3	0	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0007	1689	2	2	0	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0008	1689	1	0	1	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0009	1689	1	1	0	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0010	1689	1	0	0	0	0	1	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0011	1689	1	0	1	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0012	1689	1	1	0	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0013	1689	1	1	0	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0014	1689	1	0	0	1	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0015	1689	1	1	0	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	t0016	1689	1	1	0	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542