JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTN4IP1_chr6_106565771_106634498	0/0	t0003	1701	56	14	8	34	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0004	1703	56	20	6	26	1	3	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0005	1704	38	0	7	31	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0006	1703	11	1	5	0	0	5	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0007	1703	9	9	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0008	1703	5	0	3	2	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0009	1701	5	5	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0010	1700	4	1	3	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0011	1703	3	3	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0012	1704	2	0	0	2	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0013	1703	1	0	0	1	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0014	1703	1	1	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0015	1703	1	0	0	1	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	t0016	1703	1	1	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4RL1_chr17_1929677_2030334	0/0	t0001	2282	19	2	4	7	2	4	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0002	2291	18	0	6	10	0	2	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0003	2289	17	3	5	6	3	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0004	2291	16	2	6	5	0	3	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0005	2289	16	0	2	11	0	3	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0006	2291	16	1	8	1	5	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	1/0	t0007	2289	14	3	2	6	1	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0008	2296	11	0	0	9	0	2	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0009	2284	10	0	6	2	1	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0010	2291	8	1	1	1	2	3	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0011	2290	8	3	2	1	0	2	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0012	2290	8	0	0	8	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0013	2294	8	0	1	5	0	2	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0014	2297	8	0	1	5	0	2	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0015	2287	7	0	0	4	0	3	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0016	2289	7	2	0	4	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0017	2292	6	5	1	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0018	2299	6	0	0	5	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0019	2289	5	0	5	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0020	2282	5	0	0	5	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0021	2292	5	0	1	4	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0022	2290	4	3	1	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0023	2290	4	4	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0024	2295	4	3	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0025	2295	4	4	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0026	2295	4	0	0	4	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0027	2289	3	1	0	1	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0028	2291	3	0	0	1	1	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0029	2290	3	0	0	3	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0030	2286	3	0	0	3	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0031	2288	3	2	1	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0032	2290	2	1	1	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0033	2271	2	0	0	2	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/1	t0034	2285	2	0	0	0	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0035	2287	2	1	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0036	2289	2	1	1	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334