JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTN4RL1_chr17_1929677_2030334	0/0	t0037	2285	2	0	0	2	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0038	2287	2	1	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0039	2289	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0040	2290	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0041	2293	2	0	0	2	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0042	2287	2	0	0	0	0	2	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0043	2294	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0044	2296	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0045	2285	2	0	0	1	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0046	2287	2	0	0	1	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0047	2290	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0048	2294	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0049	2297	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0050	2297	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0051	2300	2	0	0	2	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0052	2293	2	0	1	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0053	2299	2	0	2	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0054	2284	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0055	2290	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0056	2289	1	0	0	0	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0057	2291	1	0	0	0	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0058	2287	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0059	2291	1	0	1	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0060	2280	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0061	2281	1	0	0	0	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0062	2283	1	0	0	0	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0063	2285	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0064	2287	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0065	2287	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0066	2290	1	0	1	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0067	2292	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0068	2291	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0069	2291	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0070	2293	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0071	2279	1	0	1	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0072	2281	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0073	2283	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0074	2285	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0075	2287	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0076	2289	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0077	2289	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0078	2292	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0079	2291	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0080	2292	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0081	2291	1	0	0	0	1	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0082	2291	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0083	2293	1	0	1	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0084	2288	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0085	2288	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0086	2279	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334