JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTN4RL1_chr17_1929677_2030334	0/0	t0137	2281	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	t0138	2288	1	0	0	0	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL2_chr11_57455528_57482534	1/1	t0001	962	334	90	77	119	12	34	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	t0002	962	7	6	1	0	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	t0003	962	4	0	0	4	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	t0004	962	1	1	0	0	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	t0005	962	1	0	0	1	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	t0006	962	1	1	0	0	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4R_chr22_20236415_20273318	0/1	t0001	729	355	81	71	144	16	42	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	t0002	729	15	0	0	15	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	t0003	732	7	7	0	0	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	t0004	729	5	5	0	0	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	t0005	729	3	2	1	0	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	t0006	729	2	1	0	1	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	1/0	t0007	523	1	0	0	0	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	t0008	723	1	0	0	0	0	1	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	t0009	730	1	0	0	1	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	t0010	729	1	0	0	0	0	1	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	t0011	730	1	0	0	1	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4_chr2_54967189_55055451	1/0	t0001	1119	111	19	18	53	8	12	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/1	t0002	1118	97	8	16	61	6	5	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0003	1120	44	1	17	19	1	6	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0004	1120	28	26	2	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0005	1115	26	13	3	0	1	9	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0006	1115	5	5	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0007	1120	5	5	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0008	1120	4	4	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0009	1120	4	4	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0010	1124	3	1	0	0	0	2	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0011	1124	3	0	0	3	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0012	1122	3	0	0	3	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0013	1119	3	2	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0014	1120	2	2	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0015	1118	2	0	0	0	0	2	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0016	1119	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0017	1120	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0018	1122	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0019	1120	1	0	0	0	0	1	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0020	1122	1	0	0	1	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0021	1123	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0022	1119	1	0	0	0	0	1	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0023	1119	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0024	1118	1	0	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	t0025	1119	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTP1_chr3_187192486_187206462	1/1	t0001	1423	119	17	34	41	10	15	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0002	1421	80	1	8	65	1	5	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0003	1424	77	10	12	46	0	9	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0004	1420	45	13	2	25	1	4	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0005	1423	20	14	5	1	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0006	1419	18	15	0	2	1	0	copy fasta	RTP1	chr3	187192486	187206462