JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTP1_chr3_187192486_187206462	0/0	t0007	1425	14	1	3	6	1	3	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0008	1424	9	9	0	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0009	1424	8	0	1	3	1	3	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0010	1422	8	0	3	2	2	1	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0011	1422	8	1	3	0	1	3	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0012	1423	8	7	1	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0013	1424	6	4	2	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0014	1423	4	0	1	3	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0015	1395	3	2	1	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0016	1420	3	0	0	3	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0017	1418	3	0	1	0	0	2	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0018	1424	3	0	0	3	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0019	1422	3	0	0	0	0	3	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0020	1420	1	0	0	1	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0021	1423	1	0	1	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0022	1422	1	1	0	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0023	1420	1	0	0	1	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0024	1419	1	1	0	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0025	1425	1	1	0	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	t0026	1425	1	1	0	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP2_chr3_187693259_187707557	0/0	t0001	669	187	4	36	106	9	32	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	1/1	t0002	669	157	56	30	53	7	9	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0003	669	59	31	6	20	1	1	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0004	669	5	4	1	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0005	669	2	0	0	2	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0006	669	2	0	0	2	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0007	644	2	0	2	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0008	669	1	0	0	1	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0009	669	1	0	0	1	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0010	669	1	0	0	1	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0011	669	1	1	0	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0012	669	1	0	1	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0013	669	1	1	0	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0014	669	1	0	0	0	1	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	t0015	669	1	1	0	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP3_chr3_46492976_46505950	1/0	t0001	139	221	68	32	94	7	19	copy fasta	RTP3	chr3	46492976	46505950
RTP3_chr3_46492976_46505950	0/0	t0002	139	177	27	32	95	4	19	copy fasta	RTP3	chr3	46492976	46505950
RTP3_chr3_46492976_46505950	0/1	t0003	139	28	1	8	11	1	6	copy fasta	RTP3	chr3	46492976	46505950
RTP4_chr3_187363385_187377076	0/0	t0001	761	200	13	29	136	7	15	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	t0002	761	92	21	16	40	3	12	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	t0003	761	77	16	20	26	3	12	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	1/0	t0004	761	66	39	11	4	5	6	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	t0005	761	8	0	0	8	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	t0006	761	4	0	4	0	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	t0007	761	2	2	0	0	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	t0008	761	2	2	0	0	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	t0009	761	2	0	0	2	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	t0010	761	1	0	0	0	0	1	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	t0011	761	1	1	0	0	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/1	t0012	761	1	0	0	0	0	0	copy fasta	RTP4	chr3	187363385	187377076