Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BACE1_chr11_117280698_117321256	0/0	t0017	4330	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0018	4330	1	0	0	0	1	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0019	4330	1	0	1	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0020	4330	1	0	0	0	0	1	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0021	4330	1	0	0	1	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0022	4330	1	0	1	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0023	4330	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0024	4330	1	0	1	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0025	4330	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0026	4330	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0027	4330	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0028	4330	1	0	0	0	0	1	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0029	4330	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0030	4330	1	0	1	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0031	4330	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0032	4330	1	1	0	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE1_chr11_117280698_117321256	0/0	t0033	4330	1	0	1	0	0	0	copy fasta	BACE1	chr11	117280698	117321256
BACE2_chr21_41163160_41287530	0/0	t0001	7012	72	8	22	27	5	10	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0002	7012	24	7	3	9	2	3	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/1	t0003	7012	23	1	6	10	0	5	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0004	7012	19	6	5	7	0	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0005	7012	13	13	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0006	7012	11	1	4	0	0	6	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0007	7012	10	8	2	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0008	7011	9	9	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0009	7011	6	2	2	0	1	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	1/0	t0010	7011	6	0	2	0	3	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0011	7012	6	6	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0012	7012	4	3	1	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0013	7012	4	1	3	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0014	7013	3	1	2	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0015	7012	3	0	0	3	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0016	7012	3	0	3	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0017	7013	2	2	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0018	7011	2	1	0	0	0	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0019	7012	2	1	1	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0020	7013	2	2	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0021	7013	2	2	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0022	7012	2	0	0	1	0	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0023	7012	2	0	0	0	0	2	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0024	7012	2	0	2	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0025	7012	2	0	0	2	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0026	7012	1	0	0	0	0	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0027	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0028	7013	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0029	7012	1	0	1	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0030	7097	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0031	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0032	7012	1	0	0	0	1	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0033	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530