JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTP5_chr2_241864729_241878823	0/0	t0001	597	110	8	19	78	1	4	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0002	618	71	23	13	18	5	12	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/1	t0003	578	66	7	12	27	4	15	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0004	578	37	14	10	8	2	3	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0005	618	14	14	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0006	578	6	5	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0007	618	6	6	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0008	618	6	6	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0009	618	4	4	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0010	598	3	0	0	3	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0011	618	3	0	0	3	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0012	618	2	2	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0013	557	2	2	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0014	579	2	0	1	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0015	598	2	0	1	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0016	831	2	2	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0017	619	2	0	2	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0018	597	2	0	0	2	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0019	618	2	2	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0020	752	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0021	617	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0022	619	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0023	579	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0024	620	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0025	619	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0026	595	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0027	618	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0028	599	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0029	598	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0030	619	1	0	0	0	0	1	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0031	599	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0032	579	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0033	578	1	0	0	0	0	1	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0034	597	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0035	619	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0036	598	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0037	598	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0038	597	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0039	618	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0040	618	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0041	578	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	t0042	618	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTRAF_chr14_51984546_52015694	1/1	t0001	6273	142	34	22	55	9	20	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0002	6266	107	11	13	75	1	7	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0003	6273	55	1	12	38	1	3	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0004	6270	11	4	5	0	2	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0005	6273	10	2	6	0	0	2	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0006	6266	10	9	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0007	6267	10	10	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0008	6269	7	0	1	5	0	1	copy fasta	RTRAF	chr14	51984546	52015694