JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTRAF_chr14_51984546_52015694	0/0	t0009	6270	5	0	5	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0010	6273	5	0	3	0	1	1	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0011	6273	4	1	0	3	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0012	6263	3	0	0	3	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0013	6269	3	3	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0014	6270	3	1	1	0	1	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0015	6273	3	0	3	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0016	6273	3	0	1	2	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0017	6268	3	3	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0018	6274	3	0	2	0	0	1	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0019	6266	2	0	0	2	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0020	6266	2	2	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0021	6266	2	0	0	0	1	1	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0022	6269	2	0	0	2	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0023	6270	2	0	0	2	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0024	6273	2	0	0	0	2	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0025	6273	2	0	0	0	0	2	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0026	6273	2	0	0	2	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0027	6273	2	2	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0028	6270	2	0	2	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0029	6273	1	0	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0030	6273	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0031	6273	1	0	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0032	6273	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0033	6269	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0034	6266	1	0	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0035	6266	1	0	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0036	6266	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0037	6266	1	0	0	0	0	1	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0038	6269	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0039	6266	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0040	6266	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0041	6273	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0042	6273	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0043	6273	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0044	6273	1	0	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0045	6273	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0046	6273	1	0	0	0	0	1	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0047	6273	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0048	6273	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0049	6273	1	0	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0050	6266	1	0	0	0	0	1	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0051	6270	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0052	6267	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0053	6269	1	0	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0054	6270	1	1	0	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0055	6274	1	0	0	0	0	1	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0056	6273	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	t0057	6273	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTTN_chr18_69998031_70210687	0/1	t0001	1151	62	24	14	7	2	14	copy fasta	RTTN	chr18	69998031	70210687