JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RTTN_chr18_69998031_70210687	1/0	t0002	1150	26	21	3	0	0	1	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0003	1149	14	13	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0004	1152	11	6	2	0	1	2	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0005	1151	8	0	3	4	0	1	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0006	1150	4	3	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0007	1150	4	1	1	1	0	1	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0008	1150	4	3	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0009	1151	3	0	2	0	1	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0010	1150	2	2	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0011	1151	2	1	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0012	1150	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0013	1151	1	0	0	0	0	1	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0014	1150	1	0	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0015	1151	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0016	1152	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0017	1150	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0018	1150	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0019	1151	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0020	1151	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0021	1152	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0022	1151	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0023	1149	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0024	1150	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0025	1152	1	0	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0026	1151	1	0	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	t0027	1150	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RUBCNL_chr13_46329681_46392252	1/1	t0001	9062	82	20	20	32	3	5	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0002	9055	47	2	8	35	0	2	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0003	9064	34	2	9	15	4	4	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0004	9066	17	4	1	12	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0005	9057	13	1	0	10	0	2	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0006	9063	10	4	1	4	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0007	9062	9	0	0	9	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0008	9061	8	2	1	1	0	4	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0009	9056	7	2	0	5	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0010	9066	6	5	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0011	9066	6	0	2	0	1	3	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0012	9054	5	0	0	5	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0013	9064	4	2	1	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0014	9066	4	4	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0015	9064	3	0	0	3	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0016	9063	3	2	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0017	9067	3	0	0	3	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0018	9055	3	0	0	3	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0019	9064	2	1	0	0	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0020	9062	2	0	1	0	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0021	9062	2	0	1	0	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0022	9062	2	2	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0023	9056	2	0	1	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0024	9062	2	0	0	2	0	0	copy fasta	RUBCNL	chr13	46329681	46392252