JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUBCNL_chr13_46329681_46392252	0/0	t0075	9064	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0076	9066	1	0	0	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0077	9056	1	0	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0078	9055	1	0	0	0	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0079	9055	1	0	0	0	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0080	9055	1	0	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0081	9056	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0082	9055	1	0	0	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0083	9063	1	0	0	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0084	9062	1	0	0	0	1	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0085	9063	1	0	0	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0086	9054	1	0	0	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0087	9055	1	0	0	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0088	9064	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0089	9061	1	0	0	0	1	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0090	9066	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0091	9066	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0092	9066	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0093	9067	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0094	9066	1	0	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0095	9066	1	0	0	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0096	9066	1	0	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	t0097	9065	1	0	0	0	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCN_chr3_197663867_197741904	1/0	t0001	6337	65	7	19	20	4	14	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0002	6337	17	15	2	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0003	6338	13	12	1	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0004	6337	10	1	3	4	2	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/1	t0005	6337	6	4	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0006	6336	6	0	0	3	0	3	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0007	6336	5	5	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0008	6337	5	4	1	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0009	6337	4	3	1	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0010	6337	4	4	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0011	6337	4	0	0	4	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0012	6337	3	3	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0013	6336	3	1	2	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0014	6337	2	2	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0015	6337	2	1	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0016	6337	2	2	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0017	6335	2	2	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0018	6336	2	0	0	2	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0019	6337	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0020	6335	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0021	6336	1	0	1	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0022	6336	1	0	0	0	1	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0023	6336	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0024	6334	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0025	6338	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0026	6336	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0027	6337	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904