JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUBCN_chr3_197663867_197741904	0/0	t0028	6337	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0029	6337	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0030	6337	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0031	6337	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0032	6337	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0033	6337	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0034	6337	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0035	6337	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0036	6337	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0037	6337	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0038	6337	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0039	6337	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0040	6336	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0041	6336	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0042	6336	1	0	0	1	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0043	6336	1	0	0	1	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0044	6337	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0045	6338	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0046	6338	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0047	6338	1	0	0	1	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0048	6337	1	0	0	0	1	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	t0049	6337	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUFY1_chr5_179545554_179615012	1/0	t0001	510	188	35	35	88	5	24	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/1	t0002	510	141	39	32	44	8	17	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	t0003	510	24	2	4	12	1	5	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	t0004	510	21	20	1	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	t0005	510	1	0	0	1	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	t0006	510	1	0	0	1	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY2_chr10_68338408_68412277	0/1	t0001	2449	117	16	20	50	7	23	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0002	2434	52	3	10	25	1	13	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0003	2449	13	13	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0004	2448	7	1	0	4	0	2	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0005	2448	6	6	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0006	2449	6	0	0	6	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0007	2449	6	0	4	1	1	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0008	2448	6	5	1	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0009	2450	5	1	1	2	0	1	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0010	2449	5	5	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0011	2448	4	3	1	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0012	2452	4	4	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0013	2448	3	0	3	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	1/0	t0014	2449	3	2	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0015	2449	3	1	0	0	1	1	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0016	2449	3	3	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0017	2448	2	2	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0018	2449	2	2	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0019	2449	2	1	1	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0020	2449	2	2	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0021	2449	2	1	1	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0022	2448	2	2	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277