JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUFY2_chr10_68338408_68412277	0/0	t0023	2453	2	2	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0024	2448	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0025	2449	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0026	2449	1	0	0	1	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0027	2449	1	0	0	1	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0028	2450	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0029	2449	1	0	0	1	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0030	2449	1	0	1	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0031	2448	1	0	0	1	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0032	2448	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0033	2449	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0034	2448	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0035	2449	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0036	2449	1	0	0	1	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0037	2448	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0038	2434	1	0	0	0	0	1	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0039	2449	1	0	0	1	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0040	2434	1	0	0	0	0	1	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0041	2438	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	t0042	2435	1	0	1	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY3_chr4_70716964_70813619	1/1	t0001	2571	65	13	11	28	5	6	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0002	2571	46	7	9	19	2	9	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0003	2570	32	0	2	28	0	2	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0004	2567	13	0	1	8	0	4	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0005	2570	13	12	0	0	0	1	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0006	2571	9	3	2	4	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0007	2574	7	7	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0008	2570	7	4	2	0	0	1	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0009	2570	6	6	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0010	2572	6	0	0	3	0	3	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0011	2575	6	4	0	0	2	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0012	2571	5	0	0	5	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0013	2574	4	4	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0014	2573	4	4	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0015	2569	3	0	0	3	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0016	2570	2	0	0	0	0	2	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0017	2569	2	1	1	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0018	2572	2	0	0	2	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0019	2570	2	2	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0020	2570	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0021	2575	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0022	2571	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0023	2569	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0024	2570	1	0	0	1	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0025	2573	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0026	2574	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0027	2570	1	0	0	0	0	1	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0028	2572	1	0	1	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0029	2571	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0030	2572	1	0	0	1	0	0	copy fasta	RUFY3	chr4	70716964	70813619