JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUFY3_chr4_70716964_70813619	0/0	t0031	2568	1	0	0	0	0	1	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0032	2572	1	0	0	0	0	1	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0033	2571	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0034	2570	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0035	2570	1	0	1	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0036	2572	1	0	0	0	1	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0037	2571	1	0	0	0	0	1	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0038	2570	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	t0039	2570	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY4_chr2_218064253_218095584	1/0	t0001	811	255	41	60	105	14	34	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/1	t0002	811	132	43	15	59	0	14	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	t0003	811	2	1	1	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	t0004	811	2	0	0	2	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	t0005	811	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	t0006	811	1	1	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	t0007	811	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUNDC1_chr17_42975565_43000142	0/0	t0001	3436	145	15	31	70	9	20	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0002	3438	51	13	8	20	1	9	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0003	3437	24	13	7	0	1	3	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0004	3435	12	1	0	8	1	2	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0005	3439	9	3	2	2	0	2	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	1/0	t0006	3439	9	7	1	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0007	3437	8	1	4	2	0	1	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0008	3436	6	0	5	0	0	1	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0009	3437	6	2	3	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0010	3438	5	0	0	5	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0011	3439	5	5	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/1	t0012	3436	4	0	3	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0013	3439	4	4	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0014	3436	4	4	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0015	3439	3	3	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0016	3437	3	3	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0017	3439	3	2	1	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0018	3438	2	0	1	0	1	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0019	3440	2	2	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0020	3439	2	2	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0021	3438	2	1	1	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0022	3436	2	0	0	0	0	2	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0023	3436	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0024	3437	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0025	3439	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0026	3439	1	0	0	0	1	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0027	3437	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0028	3438	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0029	3437	1	0	1	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0030	3436	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0031	3436	1	0	0	0	0	1	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0032	3436	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0033	3437	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0034	3438	1	0	1	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142