JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUNDC1_chr17_42975565_43000142	0/0	t0035	3436	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0036	3440	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0037	3439	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0038	3438	1	0	1	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0039	3436	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0040	3436	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0041	3437	1	0	0	0	0	1	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0042	3437	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	t0043	3437	1	0	0	1	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC3A_chr17_44303601_44323670	1/1	t0001	665	407	88	73	184	18	42	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	0/0	t0002	665	3	0	0	3	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	0/0	t0003	665	1	0	1	0	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	0/0	t0004	665	1	0	0	1	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3B_chr7_87623398_87837296	0/0	t0001	2683	24	1	6	10	3	4	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0002	2689	12	7	2	3	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0003	2685	11	1	4	5	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0004	2689	10	3	3	3	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0005	2691	10	1	2	5	1	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0006	2687	8	1	0	5	1	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/1	t0007	2695	7	4	1	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0008	2687	5	0	4	0	1	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	1/0	t0009	2693	5	1	0	3	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0010	2685	4	4	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0011	2687	4	0	1	0	1	2	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0012	2696	3	0	0	3	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0013	2689	3	0	2	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0014	2698	3	0	0	3	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0015	2684	3	3	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0016	2689	3	0	3	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0017	2691	3	2	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0018	2693	3	3	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0019	2695	3	0	2	0	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0020	2689	2	0	0	2	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0021	2691	2	0	0	2	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0022	2691	2	1	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0023	2692	2	0	0	2	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0024	2691	2	2	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0025	2690	2	1	1	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0026	2693	2	0	1	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0027	2696	2	0	0	2	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0028	2681	2	0	0	1	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0029	2687	2	1	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0030	2686	2	0	2	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0031	2688	2	1	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0032	2689	2	0	0	0	0	2	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0033	2691	2	1	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0034	2690	2	2	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0035	2689	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0036	2688	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0037	2691	1	0	1	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296