JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUNDC3B_chr7_87623398_87837296	0/0	t0038	2693	1	0	1	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0039	2694	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0040	2694	1	0	1	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0041	2687	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0042	2689	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0043	2689	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0044	2688	1	0	1	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0045	2688	1	0	1	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0046	2691	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0047	2694	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0048	2695	1	0	1	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0049	2695	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0050	2696	1	0	0	0	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0051	2697	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0052	2680	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0053	2684	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0054	2683	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0055	2683	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0056	2683	1	0	0	0	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0057	2683	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0058	2688	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0059	2688	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0060	2688	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0061	2687	1	0	0	0	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0062	2687	1	0	0	0	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0063	2686	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0064	2686	1	0	0	0	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0065	2682	1	0	1	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0066	2690	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0067	2689	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0068	2689	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0069	2689	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0070	2688	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0071	2687	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0072	2686	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0073	2693	1	0	1	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0074	2693	1	0	0	0	1	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0075	2693	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0076	2692	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0077	2695	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0078	2695	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0079	2694	1	0	0	0	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0080	2697	1	0	0	1	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0081	2697	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	t0082	2685	1	1	0	0	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNX1T1_chr8_91949972_92108385	0/0	t0001	5873	5	0	4	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0002	5869	4	1	0	0	2	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0003	5870	4	4	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0004	5880	4	4	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/1	t0005	5882	4	1	1	0	1	0	copy fasta	RUNX1T1	chr8	91949972	92108385