Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BACE2_chr21_41163160_41287530	0/0	t0034	7011	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0035	7011	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0036	7011	1	0	0	0	0	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0037	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0038	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0039	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0040	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0041	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0042	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0043	7012	1	0	1	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0044	7012	1	0	1	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0045	7012	1	0	0	1	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0046	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0047	7012	1	0	0	0	0	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0048	7012	1	0	0	0	0	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0049	7012	1	0	0	1	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0050	7012	1	0	0	1	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0051	7012	1	0	1	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0052	7011	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0053	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0054	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0055	7012	1	0	1	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0056	7012	1	0	0	1	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0057	7012	1	0	0	1	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0058	7012	1	0	1	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0059	7013	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0060	7012	1	0	0	0	0	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0061	7012	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0062	7012	1	0	0	0	0	1	copy fasta	BACE2	chr21	41163160	41287530
BACE2_chr21_41163160_41287530	0/0	t0063	7013	1	1	0	0	0	0	copy fasta	BACE2	chr21	41163160	41287530
BACH1_chr21_29293922_29351148	0/0	t0001	3402	85	24	26	22	4	9	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0002	3399	81	3	16	59	0	3	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	1/0	t0003	3408	53	0	16	21	3	12	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0004	3404	26	4	1	17	0	4	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0005	3404	26	0	4	22	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0006	3406	12	3	1	0	1	7	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0007	3405	10	0	0	10	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0008	3406	9	4	4	0	1	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0009	3400	6	5	1	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0010	3405	5	5	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0011	3407	5	5	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0012	3405	5	5	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0013	3400	4	4	0	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0014	3408	4	0	0	4	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0015	3402	4	3	1	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0016	3407	3	0	0	3	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/1	t0017	3402	3	0	1	0	0	1	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0018	3404	3	0	3	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0019	3398	3	2	1	0	0	0	copy fasta	BACH1	chr21	29293922	29351148
BACH1_chr21_29293922_29351148	0/0	t0020	3406	2	1	0	1	0	0	copy fasta	BACH1	chr21	29293922	29351148