JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUNX1T1_chr8_91949972_92108385	0/0	t0006	5866	3	3	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0007	5867	3	3	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0008	5870	3	3	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0009	5862	3	3	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0010	5872	3	1	0	1	1	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0011	5878	3	0	2	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0012	5882	2	2	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0013	5870	2	2	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0014	5867	2	1	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0015	5864	2	2	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0016	5868	2	2	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0017	5866	2	0	2	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0018	5874	2	1	0	1	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0019	5871	2	2	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0020	5868	2	1	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0021	5878	2	1	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0022	5880	2	2	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0023	5876	2	0	0	0	1	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0024	5884	2	0	2	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0025	5889	2	2	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0026	5870	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0027	5870	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0028	5866	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0029	5868	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0030	5870	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0031	5866	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0032	5880	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0033	5869	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0034	5880	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0035	5874	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0036	5874	1	0	0	1	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0037	5875	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0038	5868	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0039	5865	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0040	5867	1	0	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0041	5865	1	0	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0042	5848	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0043	5869	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0044	5870	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0045	5867	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0046	5868	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0047	5869	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0048	5869	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0049	5867	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0050	5865	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0051	5872	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0052	5869	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0053	5870	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0054	5870	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0055	5868	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385