JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUNX1T1_chr8_91949972_92108385	0/0	t0056	5871	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0057	5869	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0058	5880	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0059	5872	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0060	5870	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0061	5864	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0062	5865	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0063	5871	1	0	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0064	5888	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0065	5880	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0066	5878	1	0	0	1	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0067	5879	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0068	5880	1	0	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0069	5880	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0070	5884	1	0	0	0	1	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	1/0	t0071	5885	1	0	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0072	5886	1	0	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0073	5886	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0074	5902	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0075	5874	1	0	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0076	5887	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0077	5887	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0078	5879	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0079	5872	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0080	5870	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0081	5871	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0082	5867	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0083	5879	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0084	5884	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0085	5877	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0086	5881	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0087	5871	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0088	5869	1	0	0	0	0	1	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0089	5880	1	0	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	t0090	5863	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1_chr21_34782801_35054302	1/0	t0001	4529	73	29	24	10	2	7	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0002	4529	35	4	9	10	1	11	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0003	4531	8	8	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0004	4531	8	4	4	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0005	4531	8	8	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0006	4528	5	2	1	1	0	1	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0007	4530	5	2	2	0	0	1	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0008	4529	3	0	0	3	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0009	4529	3	1	2	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0010	4529	2	1	1	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0011	4529	2	0	1	0	1	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0012	4529	1	0	0	0	0	1	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0013	4529	1	0	0	0	0	1	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0014	4529	1	0	1	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/1	t0015	4529	1	0	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302