JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUNX1_chr21_34782801_35054302	0/0	t0016	4529	1	0	1	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0017	4531	1	0	0	1	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0018	4530	1	0	0	1	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0019	4529	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0020	4529	1	0	1	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0021	4529	1	0	0	1	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0022	4529	1	0	1	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0023	4529	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0024	4529	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0025	4529	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0026	4531	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0027	4529	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0028	4531	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	t0029	4529	1	0	0	1	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX2_chr6_45323330_45556082	1/1	t0001	3975	88	30	17	29	3	7	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0002	3974	24	23	1	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0003	3973	17	2	4	8	1	2	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0004	3973	12	0	3	3	1	5	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0005	3974	7	0	5	1	1	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0006	3975	6	0	5	0	1	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0007	3974	4	4	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0008	3974	3	2	1	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0009	3974	3	3	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0010	3975	2	2	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0011	3975	2	2	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0012	3974	1	1	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0013	3975	1	0	0	0	0	1	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0014	3974	1	1	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0015	3973	1	0	0	0	1	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0016	3974	1	1	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0017	3975	1	1	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0018	3974	1	1	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0019	3975	1	0	0	0	0	1	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0020	3975	1	1	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	t0021	3975	1	0	0	1	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX3_chr1_24894511_24935276	0/1	t0001	3020	113	1	32	56	7	16	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	1/0	t0002	3020	85	14	17	41	4	8	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0003	3020	30	21	9	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0004	3022	27	14	4	7	1	1	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0005	3020	22	0	1	16	0	5	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0006	3020	8	7	1	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0007	3021	6	6	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0008	3021	6	0	2	3	0	1	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0009	3020	6	0	0	3	0	3	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0010	3020	5	0	0	4	1	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0011	3021	5	4	1	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0012	3020	5	0	0	5	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0013	3023	4	2	1	1	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0014	3021	4	1	0	1	1	1	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0015	3021	4	4	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276