JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUNX3_chr1_24894511_24935276	0/0	t0016	3021	3	3	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0017	3012	3	3	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0018	3020	2	0	1	1	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0019	3020	2	0	0	2	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0020	3012	2	0	0	2	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0021	3021	2	2	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0022	3020	2	0	0	2	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0023	3020	2	0	0	2	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0024	3012	2	0	0	1	0	1	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0025	3020	2	0	0	2	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0026	3020	2	2	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0027	3020	1	0	0	0	0	1	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0028	3020	1	0	0	1	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0029	3020	1	0	1	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0030	3023	1	0	0	1	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0031	3021	1	0	0	0	1	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0032	3020	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0033	3020	1	0	0	1	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0034	3020	1	0	0	0	0	1	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0035	3020	1	0	0	0	0	1	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0036	3023	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0037	3021	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0038	3020	1	0	0	0	0	1	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0039	3020	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0040	3020	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0041	3020	1	0	0	1	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0042	3020	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0043	3021	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0044	3020	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0045	3020	1	0	0	1	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0046	3021	1	0	1	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0047	3020	1	0	1	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0048	3020	1	0	0	1	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0049	3020	1	0	0	0	1	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0050	3020	1	0	1	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0051	3020	1	0	0	1	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0052	3020	1	0	1	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0053	3022	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0054	3021	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0055	3020	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0056	3020	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0057	3020	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	t0058	3020	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUSC1_chr1_155315894_155336114	1/1	t0001	728	309	93	57	104	12	41	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	t0002	728	5	0	5	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	t0003	728	1	0	0	0	0	1	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	t0004	728	1	0	0	1	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	t0005	728	1	1	0	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	t0006	728	1	0	0	1	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC2_chr9_35485111_35566895	1/1	t0001	668	201	41	34	99	5	20	copy fasta	RUSC2	chr9	35485111	35566895