JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RUSC2_chr9_35485111_35566895	0/0	t0002	659	71	9	13	32	3	14	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0003	668	31	3	19	2	2	5	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0004	674	6	6	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0005	674	4	4	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0006	672	2	0	0	2	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0007	668	2	0	2	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0008	668	1	1	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0009	668	1	0	0	1	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0010	668	1	0	0	1	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0011	663	1	0	0	1	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	t0012	659	1	0	0	0	0	1	copy fasta	RUSC2	chr9	35485111	35566895
RUSF1_chr16_31484475_31513391	1/1	t0001	1379	350	71	55	172	16	34	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0002	1379	6	6	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0003	1379	4	0	0	0	0	4	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0004	1379	4	4	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0005	1379	3	3	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0006	1379	3	3	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0007	1379	2	2	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0008	1379	1	0	1	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0009	1379	1	1	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0010	1379	1	0	0	0	0	1	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0011	1379	1	1	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0012	1379	1	1	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	t0013	1379	1	0	0	0	0	1	copy fasta	RUSF1	chr16	31484475	31513391
RUVBL1_chr3_128075810_128128812	0/0	t0001	529	226	59	38	114	6	9	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	t0002	525	63	16	13	19	5	10	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	1/1	t0003	529	62	8	16	24	3	9	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	t0004	531	4	3	1	0	0	0	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	t0005	529	1	1	0	0	0	0	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	t0006	529	1	1	0	0	0	0	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	t0007	525	1	0	0	0	0	1	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	t0008	529	1	0	0	1	0	0	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	t0009	529	1	0	0	0	0	1	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL2_chr19_48988887_49020970	1/1	t0001	154	383	85	70	164	13	49	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	t0002	154	28	8	6	10	3	1	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	t0003	154	1	1	0	0	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RWDD1_chr6_116566504_116602675	0/0	t0001	4654	83	3	16	51	6	7	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0002	4654	82	6	13	52	5	6	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	1/0	t0003	4654	49	10	4	30	2	2	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/1	t0004	4654	40	15	11	4	1	8	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0005	4654	19	6	1	11	0	1	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0006	4654	10	9	0	0	1	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0007	4654	10	6	0	1	0	3	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0008	4655	8	8	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0009	4654	7	6	1	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0010	4654	6	1	1	0	1	3	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0011	4655	6	0	3	1	0	2	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0012	4654	6	0	0	6	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0013	4654	5	0	0	5	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	t0014	4654	4	4	0	0	0	0	copy fasta	RWDD1	chr6	116566504	116602675